Merge branch 'feature-bowtie2' into 'develop'
Add bowtie2 to Mapping (and add wrapper for bowtie2) Adding a bowtie2 wrapper to extensions and add bowtie2 as an aligner to `Mapping` Closes #241 Accepts biopet/Biopet-FunctionalTests!17 See merge request !284
No related branches found
No related tags found
Showing
- public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 1 addition, 1 deletion...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
- public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/SampleLibraryTag.scala 3 additions, 0 deletions...ain/scala/nl/lumc/sasc/biopet/core/SampleLibraryTag.scala
- public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Bowtie2.scala 234 additions, 0 deletions...c/main/scala/nl/lumc/sasc/biopet/extensions/Bowtie2.scala
- public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala 21 additions, 1 deletion...scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
- public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala 2 additions, 0 deletions...a/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
Loading
Please register or sign in to comment