Added summary jobs

kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/Kopisu.scala

@@ -48,6 +48,8 @@ class Kopisu(val root: Configurable) extends QScript with SummaryQScript with Re
       method.outputDir = new File(outputDir, "freec_method")
       add(method)
     }
+
+    addSummaryJobs()
   }
 
   /** Must return a map with used settings for this pipeline */

kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/methods/FreecMethod.scala

@@ -49,6 +49,8 @@ class FreecMethod(val root: Configurable) extends CnvMethod {
           add(fcBAFPlot)
         }
     }
+
+    addSummaryJobs()
   }
 
   override def summaryFiles = super.summaryFiles ++ snpFile.map("snp_file" -> _)