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biopet.biopet
Commits
2f77340b
Commit
2f77340b
authored
May 10, 2016
by
Peter van 't Hof
Browse files
Added summary jobs
parent
19f7d266
Changes
2
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kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/Kopisu.scala
View file @
2f77340b
...
...
@@ -48,6 +48,8 @@ class Kopisu(val root: Configurable) extends QScript with SummaryQScript with Re
method
.
outputDir
=
new
File
(
outputDir
,
"freec_method"
)
add
(
method
)
}
addSummaryJobs
()
}
/** Must return a map with used settings for this pipeline */
...
...
kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/methods/FreecMethod.scala
View file @
2f77340b
...
...
@@ -49,6 +49,8 @@ class FreecMethod(val root: Configurable) extends CnvMethod {
add
(
fcBAFPlot
)
}
}
addSummaryJobs
()
}
override
def
summaryFiles
=
super
.
summaryFiles
++
snpFile
.
map
(
"snp_file"
->
_
)
...
...
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