Gears for project 106 in Queue/Biopet

.../scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala

.../nl/lumc/sasc/biopet/extensions/kraken/KrakenReport.scala

public/biopet-public-package/pom.xml

...ala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala

public/gears/.gitignore

public/gears/pom.xml

...ain/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala

...cala/nl/lumc/sasc/biopet/pipelines/gears/GearsTrait.scala

public/gears/src/test/resources/log4j.properties

public/pom.xml