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Commit 2b1e8173 authored by Peter van 't Hof's avatar Peter van 't Hof
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Removed tool

parent fa92e13a
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biopet-tools/pom.xml
View file @ 2b1e8173
......@@ -29,11 +29,6 @@
<artifactId>BiopetTools</artifactId>
<dependencies>
<dependency>
<groupId>com.typesafe.play</groupId>
<artifactId>play-ws_2.10</artifactId>
<version>2.4.8</version>
</dependency>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
......
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/GitlabIssueToJira.scala deleted 100644 → 0
View file @ fa92e13a
package nl.lumc.sasc.biopet.tools
import java.io.{ File, PrintWriter }
import nl.lumc.sasc.biopet.utils.{ ConfigUtils, ToolCommand }
import play.api.libs.ws.WSRequest
import play.api.libs.ws.ning.NingWSClient
import scala.concurrent.ExecutionContext.Implicits.global
import scala.concurrent.duration._
import scala.concurrent.{ Await, Future }
import scala.io.Source
/**
* Created by pjvan_thof on 10-10-16.
*/
object GitlabIssueToJira extends ToolCommand {
case class Args(gitlabUrl: String = null,
gitlabProject: String = null,
gitlabToken: String = null,
outputFile: File = null,
userMappings: Option[File] = null) extends AbstractArgs
class OptParser extends AbstractOptParser {
opt[String]("gitlabUrl") required () maxOccurs 1 valueName "<url>" action { (x, c) =>
c.copy(gitlabUrl = x)
}
opt[String]("gitlabProject") required () maxOccurs 1 valueName "<string>" action { (x, c) =>
c.copy(gitlabProject = x)
}
opt[String]("gitlabToken") required () maxOccurs 1 valueName "<string>" action { (x, c) =>
c.copy(gitlabToken = x)
}
opt[File]("outputFile") required () maxOccurs 1 valueName "<string>" action { (x, c) =>
c.copy(outputFile = x)
}
opt[File]("userMappings") required () maxOccurs 1 valueName "<string>" action { (x, c) =>
c.copy(userMappings = Some(x))
} text "tsv to say which user belong to eachother, 1e column gitlab user, 2e column jira user"
}
def main(args: Array[String]): Unit = {
val argsParser = new OptParser
val cmdArgs = argsParser.parse(args, Args()) getOrElse (throw new IllegalArgumentException)
// Instantiation of the client
// In a real-life application, you would instantiate one, share it everywhere,
// and call wsClient.close() when you're done
val wsClient = NingWSClient()
val gitlabIssuesFuture = getGitlabIssues(cmdArgs.gitlabUrl, cmdArgs.gitlabProject, cmdArgs.gitlabToken, wsClient)
gitlabIssuesFuture.onFailure { case e => throw e }
val gitlabIssues = Await.result(gitlabIssuesFuture, Duration.Inf)
println(gitlabIssues.size)
println(gitlabIssues.head.issue("author"))
println(gitlabIssues.head.comments.map(_.keys))
val userMappings = cmdArgs.userMappings.map(file =>
Source.fromFile(file).getLines().filter(_.nonEmpty).map(_.split("\t", 2)).map(x => (x(0), x(1))).toMap
).getOrElse(Map())
val gitlabUsers = (gitlabIssues.map(_.issue("author").asInstanceOf[Map[String, Any]]("username").toString) :::
gitlabIssues.flatMap { x =>
if (!x.isInstanceOf[Map[String, Any]]) None
else Some(x.issue("assignee").asInstanceOf[Map[String, Any]]("username").toString)
}).distinct
gitlabUsers.foreach(user => require(userMappings.contains(user), s"User $user can't be found"))
val issueValues = gitlabIssues.reverse.map { gitlabIssue =>
val reporter = userMappings(gitlabIssue.issue("author").asInstanceOf[Map[String, Any]]("username").toString)
val assignee = if (!gitlabIssue.issue("author").isInstanceOf[Map[String, Any]]) None
else Some(userMappings(gitlabIssue.issue("author").asInstanceOf[Map[String, Any]]("username").toString))
val milestone = if (!gitlabIssue.issue("milestone").isInstanceOf[Map[String, Any]]) None
else Some(gitlabIssue.issue("milestone").asInstanceOf[Map[String, Any]]("title").toString)
val comments = gitlabIssue.comments.map { comment =>
Map(
"body" -> comment("body"),
"author" -> userMappings(comment("author").asInstanceOf[Map[String, Any]]("username").toString),
"created_at" -> comment("created_at")
)
}
val closedDate: Option[String] = gitlabIssue.issue("state") match {
case "closed" =>
Some(comments.filter(c => c("body").toString.contains("Status changed to closed")).last("created_at").toString)
case _ => None
}
val commentFields = comments.zipWithIndex.map {
case (comment, key) =>
s"comment-$key" -> s"${comment("created_at")};${comment("author")};${comment("body")}"
} toMap
val fields = Map(
"summary" -> gitlabIssue.issue("title"),
"description" -> gitlabIssue.issue("description"),
"reporter" -> reporter,
"gitlab_iid" -> gitlabIssue.issue("iid"),
"gitlab_id" -> gitlabIssue.issue("id"),
"state" -> gitlabIssue.issue("state"),
"labels" -> gitlabIssue.issue("labels").asInstanceOf[List[String]].mkString(" "),
"weburl" -> gitlabIssue.issue("web_url"),
"created" -> gitlabIssue.issue("created_at"),
"updated_at" -> gitlabIssue.issue("updated_at")
) ++ assignee.map("assignee" -> _) ++
milestone.map("milestone" -> _) ++
closedDate.map("resolution_date" -> _) ++
closedDate.map(x => "resolution" -> "Done")
fields ++ commentFields
}
val keys = issueValues.flatMap(_.keys).distinct
val writer = new PrintWriter(cmdArgs.outputFile)
writer.println(keys.mkString(","))
issueValues.foreach { issue =>
writer.print("\"" + issue.get(keys.head).getOrElse("").toString.replaceAll("\"", "\"\"") + "\"")
keys.tail.foreach { key =>
val value = issue.get(key).getOrElse("").toString.replaceAll("\"", "\"\"")
writer.print("," + (if (value.nonEmpty) "\"" + value + " \"" else ""))
}
writer.println
}
writer.close()
logger.info("Done2")
wsClient.close()
logger.info("Done3")
}
def getWsrequestJsonToMap(request: WSRequest, body: Option[String] = None, method: String = "GET") = {
val f = (method, body) match {
case ("POST", Some(body)) => request.withHeaders("Content-Type" -> "application/json").post(body)
case ("PUT", Some(body)) => request.withHeaders("Content-Type" -> "application/json").put(body)
case ("GET", None) => request.get()
case ("DELETE", None) => request.delete()
}
val r = f.map { wsResponse =>
if (wsResponse.status >= 200 && wsResponse.status <= 299)
ConfigUtils.jsonToMap(ConfigUtils.textToJson(wsResponse.body))
else {
logger.error(s"Request gave status ${wsResponse.status}: ${wsResponse.body}")
throw new IllegalStateException(s"Request gave status ${wsResponse.status}")
}
}
r.onFailure { case e => throw new RuntimeException(e) }
r
}
case class GitlabIssue(issue: Map[String, Any], comments: List[Map[String, Any]])
def waitForFuture[T](future: Future[T]): T = {
Await.ready(future, Duration.Inf)
if (future.value.get.isFailure) sys.exit(1)
Await.result(future, Duration.Inf)
}
def getGitlabIssues(url: String,
project: String,
token: String,
wsClient: NingWSClient,
page: Int = 1,
perPage: Int = 100): Future[List[GitlabIssue]] = {
val issuesUrl = s"${url}/api/v3/projects/${project.replace("/", "%2F")}/issues"
getGitlabPagedOutput(issuesUrl, token, wsClient, Map("per_page" -> "100"))
.map { issues =>
issues.map { issue =>
//if (issue("user_notes_count") == 0) GitlabIssue(issue, Nil)
GitlabIssue(issue, waitForFuture(getGitlabPagedOutput(issuesUrl + s"/${issue("id")}/notes", token, wsClient)))
// GitlabIssue(issue, Nil)
}
}
}
def getGitlabPagedOutput(url: String,
token: String,
wsClient: NingWSClient,
queryParams: Map[String, String] = Map()): Future[List[Map[String, Any]]] = {
val f = Future {
val init = wsClient
.url(url)
.withHeaders("PRIVATE-TOKEN" -> token)
.withQueryString(queryParams.toSeq: _*)
.get().map { wsResponse =>
val pages = wsResponse.header("X-Total-Pages").map(_.toInt).getOrElse(1)
val page1 = ConfigUtils.textToJson(wsResponse.body).array.get.map(ConfigUtils.jsonToMap)
(page1, pages)
}
val (page1, pages) = waitForFuture(init)
val results = for (i <- 2 to pages) yield {
wsClient
.url(url)
.withHeaders("PRIVATE-TOKEN" -> token)
.withQueryString((queryParams.toSeq :+ ("page" -> s"$i")): _*)
.get().map { wsResponse =>
if (wsResponse.status >= 200 && wsResponse.status <= 299)
ConfigUtils.textToJson(wsResponse.body).array.get.map(ConfigUtils.jsonToMap)
else throw new IllegalStateException(s"Request gave status ${wsResponse.status}")
}
}
results.foldLeft(page1) { case (a, b) => a ++ waitForFuture(b) }
}
f.onFailure { case e => throw e }
f
}
}
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