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Commit 2ae8575e authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix scatter

parent 4a23415a
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protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala
View file @ 2ae8575e
......@@ -8,11 +8,12 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import java.io.File
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.Output
import org.broadinstitute.gatk.utils.commandline.{Gather, Output}
import org.broadinstitute.gatk.utils.variant.GATKVCFIndexType
class HaplotypeCaller(val root: Configurable) extends org.broadinstitute.gatk.queue.extensions.gatk.HaplotypeCaller with GatkGeneral {
@Gather(enabled = false)
@Output(required = false)
protected var vcfIndex: File = _
......
protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala
View file @ 2ae8575e
......@@ -8,10 +8,11 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import java.io.File
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.Output
import org.broadinstitute.gatk.utils.commandline.{Gather, Output}
class UnifiedGenotyper(val root: Configurable) extends org.broadinstitute.gatk.queue.extensions.gatk.UnifiedGenotyper with GatkGeneral {
@Gather(enabled = false)
@Output(required = false)
protected var vcfIndex: File = _
......
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