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biopet.biopet
Commits
2a338501
Commit
2a338501
authored
Apr 04, 2015
by
bow
Browse files
Add reference files to Gentrap summary
parent
e9393c0d
Changes
1
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public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
View file @
2a338501
...
...
@@ -268,6 +268,10 @@ class Gentrap(val root: Configurable) extends QScript with MultiSampleQScript wi
/** Files that will be listed in the summary file */
def
summaryFiles
:
Map
[
String
,
File
]
=
Map
(
// NOTE: technically we can use different references in each of the sample, but for simplicity's sake we store the
// reference information in the pipeline level now.
"reference_fasta"
->
reference
,
"reference_dict"
->
referenceDict
,
"annotation_refflat"
->
annotationRefFlat
)
++
Map
(
"annotation_gtf"
->
annotationGtf
,
...
...
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