Commit 2a338501 authored by bow's avatar bow
Browse files

Add reference files to Gentrap summary

parent e9393c0d
......@@ -268,6 +268,10 @@ class Gentrap(val root: Configurable) extends QScript with MultiSampleQScript wi
/** Files that will be listed in the summary file */
def summaryFiles: Map[String, File] = Map(
// NOTE: technically we can use different references in each of the sample, but for simplicity's sake we store the
// reference information in the pipeline level now.
"reference_fasta" -> reference,
"reference_dict" -> referenceDict,
"annotation_refflat" -> annotationRefFlat
) ++ Map(
"annotation_gtf" -> annotationGtf,
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