Commit 2916f72b authored 9 years ago by Peter van 't Hof

Moved extensions to new module

parent eceac8c1

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public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/AddOrReplaceReadGroups.scala 0 additions, 0 deletions

...asc/biopet/extensions/picard/AddOrReplaceReadGroups.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/BedToIntervalList.scala 0 additions, 0 deletions

...umc/sasc/biopet/extensions/picard/BedToIntervalList.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CalculateHsMetrics.scala 0 additions, 0 deletions

...mc/sasc/biopet/extensions/picard/CalculateHsMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectAlignmentSummaryMetrics.scala 0 additions, 0 deletions

...et/extensions/picard/CollectAlignmentSummaryMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectGcBiasMetrics.scala 0 additions, 0 deletions

.../sasc/biopet/extensions/picard/CollectGcBiasMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectInsertSizeMetrics.scala 0 additions, 0 deletions

...c/biopet/extensions/picard/CollectInsertSizeMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectMultipleMetrics.scala 0 additions, 0 deletions

...asc/biopet/extensions/picard/CollectMultipleMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectRnaSeqMetrics.scala 0 additions, 0 deletions

.../sasc/biopet/extensions/picard/CollectRnaSeqMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectTargetedPcrMetrics.scala 0 additions, 0 deletions

.../biopet/extensions/picard/CollectTargetedPcrMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectWgsMetrics.scala 0 additions, 0 deletions

...umc/sasc/biopet/extensions/picard/CollectWgsMetrics.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/GatherBamFiles.scala 0 additions, 0 deletions

...l/lumc/sasc/biopet/extensions/picard/GatherBamFiles.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala 0 additions, 0 deletions

...l/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MergeSamFiles.scala 0 additions, 0 deletions

...nl/lumc/sasc/biopet/extensions/picard/MergeSamFiles.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/Picard.scala 0 additions, 0 deletions

.../scala/nl/lumc/sasc/biopet/extensions/picard/Picard.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/ReorderSam.scala 0 additions, 0 deletions

...la/nl/lumc/sasc/biopet/extensions/picard/ReorderSam.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala 0 additions, 0 deletions

...la/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortSam.scala 0 additions, 0 deletions

...scala/nl/lumc/sasc/biopet/extensions/picard/SortSam.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/Sambamba.scala 0 additions, 0 deletions

...la/nl/lumc/sasc/biopet/extensions/sambamba/Sambamba.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/SambambaFlagstat.scala 0 additions, 0 deletions

...mc/sasc/biopet/extensions/sambamba/SambambaFlagstat.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/SambambaIndex.scala 0 additions, 0 deletions

.../lumc/sasc/biopet/extensions/sambamba/SambambaIndex.scala

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