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Commit 2765ff0c authored by Peter van 't Hof's avatar Peter van 't Hof
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Added reference trait for tophat 

(cherry picked from commit 73990f01)
parent e07267db
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Tophat.scala
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− 2
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...@@ -17,14 +17,14 @@ package nl.lumc.sasc.biopet.extensions ...@@ -17,14 +17,14 @@ package nl.lumc.sasc.biopet.extensions
import java.io.File import java.io.File
import nl.lumc.sasc.biopet.core.BiopetCommandLineFunction import nl.lumc.sasc.biopet.core.{Reference, BiopetCommandLineFunction}
import nl.lumc.sasc.biopet.core.config.Configurable import nl.lumc.sasc.biopet.core.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{ Argument, Input, Output } import org.broadinstitute.gatk.utils.commandline.{ Argument, Input, Output }
/** /**
* Extension for Tophat * Extension for Tophat
*/ */
class Tophat(val root: Configurable) extends BiopetCommandLineFunction { class Tophat(val root: Configurable) extends BiopetCommandLineFunction with Reference {
executable = config("exe", default = "tophat", freeVar = false) executable = config("exe", default = "tophat", freeVar = false)
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