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Merge branch 'feature-wipereads' into 'develop'
Feature wipereads The main update here is to use `com.google.guava` for BloomFilter as it works fine with OpenJDK7 (the one that GATK uses internally). This means the pom.xml file has also been updated. As this is mainly for GATK 3.3 dependency, I've also updated the IntelliJ project file. See merge request !21
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- .idea/libraries/Maven__com_baqend_bloom_filter_1_02.xml 0 additions, 13 deletions.idea/libraries/Maven__com_baqend_bloom_filter_1_02.xml
- .idea/libraries/Maven__com_google_code_gson_gson_2_2_4.xml 0 additions, 13 deletions.idea/libraries/Maven__com_google_code_gson_gson_2_2_4.xml
- .idea/libraries/Maven__com_google_guava_guava_18_0.xml 4 additions, 4 deletions.idea/libraries/Maven__com_google_guava_guava_18_0.xml
- .idea/libraries/Maven__org_apache_commons_commons_pool2_2_2.xml 0 additions, 13 deletions...libraries/Maven__org_apache_commons_commons_pool2_2_2.xml
- .idea/libraries/Maven__org_broadinstitute_gatk_gatk_queue_package_distribution_3_3.xml 13 additions, 0 deletions...oadinstitute_gatk_gatk_queue_package_distribution_3_3.xml
- .idea/libraries/Maven__redis_clients_jedis_2_5_1.xml 0 additions, 13 deletions.idea/libraries/Maven__redis_clients_jedis_2_5_1.xml
- .idea/misc.xml 1 addition, 1 deletion.idea/misc.xml
- biopet-framework/BiopetFramework.iml 3 additions, 6 deletionsbiopet-framework/BiopetFramework.iml
- biopet-framework/pom.xml 3 additions, 7 deletionsbiopet-framework/pom.xml
- biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala 175 additions, 166 deletions.../src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
- biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala 224 additions, 226 deletions...t/scala/nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala
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