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biopet.biopet
Commits
23798456
Commit
23798456
authored
9 years ago
by
Wai Yi Leung
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Rename of filenames
parent
f69e3f80
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public/tinycap/pom.xml
+1
-0
1 addition, 0 deletions
public/tinycap/pom.xml
public/tinycap/src/main/scala/nl/lumc/sasc/biopet/pipelines/tinycap/measures/FragmentsPerSmallRna.scala
+4
-4
4 additions, 4 deletions
...pet/pipelines/tinycap/measures/FragmentsPerSmallRna.scala
with
5 additions
and
4 deletions
public/tinycap/pom.xml
+
1
−
0
View file @
23798456
...
...
@@ -9,6 +9,7 @@
</parent>
<modelVersion>
4.0.0
</modelVersion>
<inceptionYear>
2016
</inceptionYear>
<artifactId>
TinyCap
</artifactId>
<dependencies>
...
...
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public/tinycap/src/main/scala/nl/lumc/sasc/biopet/pipelines/tinycap/measures/FragmentsPerSmallRna.scala
+
4
−
4
View file @
23798456
...
...
@@ -30,12 +30,12 @@ class FragmentsPerSmallRna(val root: Configurable) extends QScript with Measurem
id
->
job
}
addMergeTableJob
(
jobs
.
values
.
map
(
_
.
output
).
toList
,
mergedTable
,
"fragments_per_
gene
"
,
s
".$name.counts"
)
addHeatmapJob
(
mergedTable
,
heatmap
,
"fragments_per_
gene
"
)
addMergeTableJob
(
jobs
.
values
.
map
(
_
.
output
).
toList
,
mergedTable
,
"fragments_per_
smallrna
"
,
s
".$name.counts"
)
addHeatmapJob
(
mergedTable
,
heatmap
,
"fragments_per_
smallrna
"
)
addSummaryJobs
()
}
def
mergedTable
=
new
File
(
outputDir
,
s
"$name.fragments_per_
gene
.tsv"
)
def
heatmap
=
new
File
(
outputDir
,
s
"$name.fragments_per_
gene
.png"
)
def
mergedTable
=
new
File
(
outputDir
,
s
"$name.fragments_per_
smallrna
.tsv"
)
def
heatmap
=
new
File
(
outputDir
,
s
"$name.fragments_per_
smallrna
.png"
)
}
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