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Commit 2139a95e authored by bow's avatar bow
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Formatting updates

parent 0453d301
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/ReorderSam.scala
+ 2
− 2
View file @ 2139a95e
......@@ -35,10 +35,10 @@ class ReorderSam(val root: Configurable) extends Picard {
var output: File = null
@Argument(doc = "Allow incomplete dict concordance", required = false)
var allowIncompleteDictConcordance: Boolean = config("allow_incomplete_dict_concordance", default= false)
var allowIncompleteDictConcordance: Boolean = config("allow_incomplete_dict_concordance", default = false)
@Argument(doc = "Allow contig length discordance", required = false)
var allowContigLengthDiscordance: Boolean = config("allow_contig_length_discordance", default= false)
var allowContigLengthDiscordance: Boolean = config("allow_contig_length_discordance", default = false)
override def commandLine = super.commandLine +
conditional(allowIncompleteDictConcordance, "ALLOW_INCOMPLETE_DICT_CONCORDANCE=TRUE") +
......
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