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1d463d82

Commit 1d463d82 authored 9 years ago by Wai Yi Leung

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Change executable from pysvtools for SV merging.

Add all project VCF file merge into 1 global merge file

parent 658b77f5

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Changes 4

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala 1 addition, 1 deletion

...main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala
public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala 5 additions, 5 deletions

...ls/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
public/biopet-utils/src/test/scala/nl/lumc/sasc/biopet/utils/BamUtilsTest.scala 2 additions, 2 deletions

...c/test/scala/nl/lumc/sasc/biopet/utils/BamUtilsTest.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala 16 additions, 3 deletions

.../nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala

with 24 additions and 11 deletions

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