Update Seqtk wrapper namespace

biopet-framework/src/main/scala/nl/lumc/sasc/biopet/function/seqtk/Seqtk.scala

+/**
+ * Copyright (c) 2014 Leiden University Medical Center
+ *
+ * @author  Wibowo Arindrarto
+ */
+
+package nl.lumc.sasc.biopet.function.seqtk
+
+import java.io.File
+import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
+import nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
+import nl.lumc.sasc.biopet.core.config.Configurable
+
+/**
+ * Abstract class for all seqtk wrappers.
+ */
+abstract class Seqtk extends BiopetCommandLineFunction {
+  executable = config("exe", default = "seqtk", submodule = "seqtk")
+  override def versionCommand = executable
+  override val versionRegex = """Version: (.*)""".r
+}

biopet-framework/src/main/scala/nl/lumc/sasc/biopet/function/Seqtk.scala → biopet-framework/src/main/scala/nl/lumc/sasc/biopet/function/seqtk/SeqtkSeq.scala

@@ -4,22 +4,13 @@
  * @author  Wibowo Arindrarto
  */
 
-package nl.lumc.sasc.biopet.function
+package nl.lumc.sasc.biopet.function.seqtk
 
 import java.io.File
 import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
 import nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
 import nl.lumc.sasc.biopet.core.config.Configurable
 
-/**
- * Abstract class for all seqtk wrappers.
- */
-abstract class Seqtk extends BiopetCommandLineFunction {
-  executable = config("exe", default = "seqtk", submodule = "seqtk")
-  override def versionCommand = executable
-  override val versionRegex = """Version: (.*)""".r
-}
-
 /**
  * Wrapper for the seqtk seq subcommand.
  * Written based on seqtk version 1.0-r63-dirty.