Commit 19c9f1fb authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed tests

parent ec347f6d
......@@ -33,7 +33,6 @@ class CollectRnaSeqMetrics(val root: Configurable) extends Picard with Summariza
@Input(doc = "Gene annotations in refFlat form", required = true)
var refFlat: File = config("refFlat")
//TODO: RefFlat could break gentrap, needs to be checked
@Input(doc = "Location of rRNA sequences in interval list format", required = false)
var ribosomalIntervals: Option[File] = config("ribosomal_intervals")
......
......@@ -189,6 +189,7 @@ object GentrapTest {
val executables = Map(
"reference" -> "test",
"dict" -> "test",
"refFlat" -> "test",
"annotation_gtf" -> "test",
"annotation_bed" -> "test",
"annotation_refflat" -> "test",
......
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