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17ac2dce

Commit 17ac2dce authored 9 years ago by Peter van 't Hof

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Adding report to shiva pipeline

parent 6a31f16a

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public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala 6 additions, 5 deletions

...c/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
public/biopet-framework/src/main/resources/nl/lumc/sasc/biopet/extensions/rscript/stackedBar.R 1 addition, 1 deletion

...urces/nl/lumc/sasc/biopet/extensions/rscript/stackedBar.R
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala 6 additions, 0 deletions

...c/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/report/ReportBuilder.scala 30 additions, 4 deletions

...scala/nl/lumc/sasc/biopet/core/report/ReportBuilder.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/rscript/StackedBarPlot.scala 1 addition, 1 deletion

.../lumc/sasc/biopet/extensions/rscript/StackedBarPlot.scala
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepReport.scala 14 additions, 10 deletions

...umc/sasc/biopet/pipelines/flexiprep/FlexiprepReport.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala 16 additions, 9 deletions

...ala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala 7 additions, 0 deletions

...cala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala

with 81 additions and 30 deletions

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