Commit 164f4b11 authored by bow's avatar bow
Browse files

Fix error in ExtractAlignedFastq single-end mode where the input file is rewritten

parent 9133b3b4
......@@ -263,7 +263,7 @@ object ExtractAlignedFastq extends ToolCommand {
case (None, None) => extractReads(memFunc,
new FastqReader(commandArgs.inputFastq1),
new BasicFastqWriter(commandArgs.inputFastq1))
new BasicFastqWriter(commandArgs.outputFastq1))
case (Some(i2), Some(o2)) => extractReads(memFunc,
new FastqReader(commandArgs.inputFastq1),
......
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