Commit 14fa14d5 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added aggregate option for scoverage

parent 07388f51
......@@ -17,6 +17,6 @@
<module>public</module>
<module>protected</module>
<module>external-example</module>
<module>biopet-aggregate</module>
<!--<module>biopet-aggregate</module>-->
</modules>
</project>
......@@ -94,7 +94,7 @@ trait BiopetQScript extends Configurable with GatkLogging {
if (!i.file.exists()) Logging.addError(s"Input file does not exist: ${i.file}")
else if (!i.file.canRead()) Logging.addError(s"Input file can not be read: ${i.file}")
}
this match {
case q: MultiSampleQScript if q.onlySamples.nonEmpty && !q.samples.forall(x => q.onlySamples.contains(x._1)) =>
logger.info("Write report is skipped because sample flag is used")
......
......@@ -51,6 +51,7 @@
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<scoverage.plugin.version>1.1.1</scoverage.plugin.version>
<scalaVersion>2.10.4</scalaVersion>
</properties>
<build>
......@@ -243,14 +244,10 @@
<artifactId>scoverage-maven-plugin</artifactId>
<version>${scoverage.plugin.version}</version>
<configuration>
<scalaVersion>2.10.2</scalaVersion>
<scalaVersion>${scalaVersion}</scalaVersion>
<aggregate>true</aggregate>
<!-- other parameters -->
</configuration>
<executions>
<execution>
<phase>test</phase>
</execution>
</executions>
</plugin>
</plugins>
</build>
......
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