Skip to content
GitLab
Commit 1395457c authored by Peter van 't Hof's avatar Peter van 't Hof Committed by bow
Browse files

Fix on output variable

parent d6feb88c
Hide whitespace changes
Inline Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Fastqc.scala
View file @ 1395457c
...@@ -62,7 +62,7 @@ object Fastqc { ...@@ -62,7 +62,7 @@ object Fastqc {
if (filename.endsWith(".gzip")) filename = filename.substring(0, filename.size - 5) if (filename.endsWith(".gzip")) filename = filename.substring(0, filename.size - 5)
if (filename.endsWith(".fastq")) filename = filename.substring(0, filename.size - 6) if (filename.endsWith(".fastq")) filename = filename.substring(0, filename.size - 6)
//if (filename.endsWith(".fq")) filename = filename.substring(0,filename.size - 3) //if (filename.endsWith(".fq")) filename = filename.substring(0,filename.size - 3)
fastqcCommand.jobOutputFile = new File(outDir + "/" + filename + "_fastqc.zip") fastqcCommand.output = new File(outDir + "/" + filename + "_fastqc.zip")
fastqcCommand.afterGraph fastqcCommand.afterGraph
return fastqcCommand return fastqcCommand
} }
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment