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biopet.biopet
Commits
1395457c
Commit
1395457c
authored
Jul 27, 2014
by
Peter van 't Hof
Committed by
bow
Jul 28, 2014
Browse files
Fix on output variable
parent
d6feb88c
Changes
1
Hide whitespace changes
Inline
Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Fastqc.scala
View file @
1395457c
...
@@ -62,7 +62,7 @@ object Fastqc {
...
@@ -62,7 +62,7 @@ object Fastqc {
if
(
filename
.
endsWith
(
".gzip"
))
filename
=
filename
.
substring
(
0
,
filename
.
size
-
5
)
if
(
filename
.
endsWith
(
".gzip"
))
filename
=
filename
.
substring
(
0
,
filename
.
size
-
5
)
if
(
filename
.
endsWith
(
".fastq"
))
filename
=
filename
.
substring
(
0
,
filename
.
size
-
6
)
if
(
filename
.
endsWith
(
".fastq"
))
filename
=
filename
.
substring
(
0
,
filename
.
size
-
6
)
//if (filename.endsWith(".fq")) filename = filename.substring(0,filename.size - 3)
//if (filename.endsWith(".fq")) filename = filename.substring(0,filename.size - 3)
fastqcCommand
.
jobO
utput
File
=
new
File
(
outDir
+
"/"
+
filename
+
"_fastqc.zip"
)
fastqcCommand
.
o
utput
=
new
File
(
outDir
+
"/"
+
filename
+
"_fastqc.zip"
)
fastqcCommand
.
afterGraph
fastqcCommand
.
afterGraph
return
fastqcCommand
return
fastqcCommand
}
}
...
...
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