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biopet.biopet
Commits
139202a4
Commit
139202a4
authored
Sep 20, 2016
by
Peter van 't Hof
Browse files
Split plots in diffrent pages
parent
3bc16021
Changes
1
Hide whitespace changes
Inline
Side-by-side
gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala
View file @
139202a4
...
...
@@ -45,11 +45,11 @@ object GearsReport extends MultisampleReportBuilder {
.
map
(
x
=>
new
File
(
x
.
toString
))
ReportPage
(
(
if
(
centrifugeExecuted
)
List
(
"Centriguge analysis"
->
ReportPage
(
List
(),
List
(
"Unique Krona plot"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
,
(
if
(
centrifugeExecuted
)
List
(
"Centriguge analysis"
->
ReportPage
(
List
(
"Non-unique"
->
ReportPage
(
List
(),
List
(
"All mappings"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
,
Map
(
"summaryStatsTag"
->
"centrifuge_report"
)
)),
Map
())),
List
(
"Unique mappings"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
,
Map
(
"summaryStatsTag"
->
"centrifuge_unique_report"
)
),
"All Krona plot"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
,
Map
(
"summaryStatsTag"
->
"centrifuge_report"
)
)),
Map
(
"summaryModuleTag"
->
"gearscentrifuge"
)))
else
Nil
)
:::
(
if
(
krakenExecuted
)
List
(
"Kraken analysis"
->
ReportPage
(
List
(),
List
(
"Krona plot"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
...
...
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