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biopet.biopet
Commits
10c5ff4c
Commit
10c5ff4c
authored
Feb 10, 2015
by
Peter van 't Hof
Browse files
addError instead of throwing an exeption
parent
f8f5f0ad
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala
View file @
10c5ff4c
...
...
@@ -16,6 +16,7 @@
package
nl.lumc.sasc.biopet.utils
import
java.io.File
import
nl.lumc.sasc.biopet.core.BiopetQScript
import
nl.lumc.sasc.biopet.core.Logging
import
nl.lumc.sasc.biopet.core.config.ConfigValue
import
argonaut._
,
Argonaut
.
_
...
...
@@ -330,13 +331,14 @@ object ConfigUtils extends Logging {
trait
ImplicitConversions
{
import
scala.language.implicitConversions
//TODO: unit test on message
private
def
requiredValue
(
value
:
ConfigValue
)
:
Unit
=
{
if
(!
valueExists
(
value
))
throw
new
IllegalStateException
(
"Value does not exist but is required, key: "
+
value
.
requestIndex
.
key
+
private
def
requiredValue
(
value
:
ConfigValue
)
:
Boolean
=
{
val
exist
=
valueExists
(
value
)
if
(!
exist
)
BiopetQScript
.
addError
(
"Value does not exist but is required, key: "
+
value
.
requestIndex
.
key
+
" module: "
+
value
.
requestIndex
.
module
+
(
if
(
value
.
requestIndex
.
path
!=
Nil
)
" path: "
+
value
.
requestIndex
.
path
.
mkString
(
"->"
)
else
""
))
exist
}
private
def
valueExists
(
value
:
ConfigValue
)
:
Boolean
=
{
...
...
@@ -349,8 +351,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2file
(
value
:
ConfigValue
)
:
File
=
{
requiredValue
(
value
)
new
File
(
any2string
(
value
.
value
)
)
if
(
requiredValue
(
value
)
)
new
File
(
any2string
(
value
.
value
))
else
new
File
(
""
)
}
/**
...
...
@@ -369,8 +371,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2string
(
value
:
ConfigValue
)
:
String
=
{
requiredValue
(
value
)
any2string
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2string
(
value
.
value
)
else
""
}
/**
...
...
@@ -389,8 +391,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2long
(
value
:
ConfigValue
)
:
Long
=
{
requiredValue
(
value
)
any2long
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2long
(
value
.
value
)
else
0L
}
/**
...
...
@@ -409,8 +411,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2int
(
value
:
ConfigValue
)
:
Int
=
{
requiredValue
(
value
)
any2int
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2int
(
value
.
value
)
else
0
}
/**
...
...
@@ -429,8 +431,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2double
(
value
:
ConfigValue
)
:
Double
=
{
requiredValue
(
value
)
any2double
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2double
(
value
.
value
)
else
0.0
}
/**
...
...
@@ -449,8 +451,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2float
(
value
:
ConfigValue
)
:
Float
=
{
requiredValue
(
value
)
any2float
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2float
(
value
.
value
)
else
0f
}
/**
...
...
@@ -469,8 +471,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2boolean
(
value
:
ConfigValue
)
:
Boolean
=
{
requiredValue
(
value
)
any2boolean
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2boolean
(
value
.
value
)
else
false
}
/**
...
...
@@ -489,8 +491,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2list
(
value
:
ConfigValue
)
:
List
[
Any
]
=
{
requiredValue
(
value
)
any2list
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2list
(
value
.
value
)
else
Nil
}
/**
...
...
@@ -499,8 +501,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2stringList
(
value
:
ConfigValue
)
:
List
[
String
]
=
{
requiredValue
(
value
)
any2stringList
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2stringList
(
value
.
value
)
else
Nil
}
/**
...
...
@@ -509,8 +511,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2stringSet
(
value
:
ConfigValue
)
:
Set
[
String
]
=
{
requiredValue
(
value
)
any2stringList
(
value
.
value
).
to
Set
if
(
requiredValue
(
value
)
)
any2stringList
(
value
.
value
).
toSet
else
Set
()
}
/**
...
...
@@ -519,8 +521,8 @@ object ConfigUtils extends Logging {
* @return
*/
implicit
def
configValue2map
(
value
:
ConfigValue
)
:
Map
[
String
,
Any
]
=
{
requiredValue
(
value
)
any2map
(
value
.
value
)
if
(
requiredValue
(
value
)
)
any2map
(
value
.
value
)
else
Map
(
)
}
}
}
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