Commit 0b8f1ada authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Merge branch 'feature-vep_custom' into develop

parents 4fc971d4 1f5096b6
......@@ -114,7 +114,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
var fasta: Option[String] = config("fasta")
var sift: Option[String] = config("sift")
var polyphen: Option[String] = config("polyphen")
var custom: Option[String] = config("custom")
var custom: List[String] = config("custom", default = Nil)
var plugin: List[String] = config("plugin", default = Nil)
var individual: Option[String] = config("individual")
var fields: Option[String] = config("fields")
......@@ -227,7 +227,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
optional("--fasta", fasta) +
optional("--sift", sift) +
optional("--polyphen", polyphen) +
optional("--custom", custom) +
repeat("--custom", custom) +
repeat("--plugin", plugin) +
optional("--individual", individual) +
optional("--fields", fields) +
......
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