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biopet.biopet
Commits
094de5f1
Commit
094de5f1
authored
Mar 05, 2016
by
Peter van 't Hof
Browse files
Fixed tests on OSX
parent
3d022abb
Changes
1
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Inline
Side-by-side
public/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/summary/WriteSummaryTest.scala
View file @
094de5f1
...
...
@@ -197,7 +197,7 @@ class WriteSummaryTest extends TestNGSuite with Matchers {
object
WriteSummaryTest
{
def
makeWriter
(
root
:
Configurable
,
c
:
Map
[
String
,
Any
]
=
Map
())
=
new
WriteSummary
(
root
)
{
override
def
globalConfig
=
new
Config
(
c
)
override
def
globalConfig
=
new
Config
(
c
+
(
"exe"
->
"test"
)
)
override
def
outputs
=
Seq
()
override
def
inputs
=
Seq
()
qSettings
=
new
QSettings
{
...
...
@@ -238,7 +238,7 @@ object WriteSummaryTest {
libId
=
l
summaryName
=
"test"
outputDir
=
new
File
(
"."
).
getAbsoluteFile
override
def
globalConfig
=
new
Config
(
c
)
override
def
globalConfig
=
new
Config
(
c
+
(
"exe"
->
"test"
)
)
def
summarySettings
:
Map
[
String
,
Any
]
=
settings
def
summaryFiles
:
Map
[
String
,
File
]
=
files
val
tempFile
=
File
.
createTempFile
(
"summary"
,
".json"
)
...
...
@@ -256,7 +256,7 @@ object WriteSummaryTest {
new
MultiSampleQScript
with
QScript
{
summaryName
=
"test"
outputDir
=
new
File
(
"."
).
getAbsoluteFile
override
def
globalConfig
=
new
Config
(
c
)
override
def
globalConfig
=
new
Config
(
c
+
(
"exe"
->
"test"
)
)
def
summarySettings
:
Map
[
String
,
Any
]
=
settings
def
summaryFiles
:
Map
[
String
,
File
]
=
files
val
tempFile
=
File
.
createTempFile
(
"summary"
,
".json"
)
...
...
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