Commit 0886c76f authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added general vcf utils

parent 2150ef84
package nl.lumc.sasc.biopet.util
import htsjdk.variant.variantcontext.VariantContext
import scala.collection.JavaConversions._
/** Utility object for general vcf file/records functions. */
object VcfUtils {
* Return longest allele of VariantContext.
* @param vcfRecord record to check
* @return allele with most nucleotides
def getLongestAllele(vcfRecord: VariantContext) = {
val alleles = vcfRecord.getAlleles
val longestAlleleId =
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