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Commit 07c60ba5 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed emty list

parent ff8bbecb
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......@@ -25,8 +25,8 @@ class CombineReads(val root: Configurable) extends QScript with SummaryQScript w
private lazy val flash = new Flash(this)
private lazy val forwardPrimers: List[String] = config("forward_primers")
private lazy val reversePrimers: List[String] = config("reverse_primers")
private lazy val forwardPrimers: List[String] = config("forward_primers", default = Nil)
private lazy val reversePrimers: List[String] = config("reverse_primers", default = Nil)
def combinedFastq: File = if ((forwardPrimers :: reversePrimers).nonEmpty)
swapExt(outputDir, flash.combinedFastq, ".fastq.gz", ".clip.fastq.gz")
......
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