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Merge branch 'feature-extract_aligned_fastq' into 'develop'
Feature extract aligned fastq This fixes the bug found earlier (unreported) in command line invocation. Also, tests are now done on the command line flag (which comes with the required refactoring). See merge request !28
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- biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala 52 additions, 59 deletions...scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
- biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastqUnitTest.scala 62 additions, 44 deletions.../lumc/sasc/biopet/tools/ExtractAlignedFastqUnitTest.scala
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