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biopet.biopet
Commits
01d2c652
Commit
01d2c652
authored
Nov 17, 2016
by
Peter van 't Hof
Browse files
Format change
parent
ecd397c8
Changes
3
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biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/ReferenceTest.scala
View file @
01d2c652
...
...
@@ -17,8 +17,8 @@ package nl.lumc.sasc.biopet.core
import
java.io.File
import
java.nio.file.Paths
import
nl.lumc.sasc.biopet.utils.
{
ConfigUtils
,
Logging
}
import
nl.lumc.sasc.biopet.utils.config.
{
Config
,
Configurable
}
import
nl.lumc.sasc.biopet.utils.
{
ConfigUtils
,
Logging
}
import
nl.lumc.sasc.biopet.utils.config.
{
Config
,
Configurable
}
import
org.scalatest.Matchers
import
org.scalatest.mock.MockitoSugar
import
org.scalatest.testng.TestNGSuite
...
...
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
View file @
01d2c652
...
...
@@ -17,10 +17,10 @@ package nl.lumc.sasc.biopet.extensions
import
java.io.File
import
nl.lumc.sasc.biopet.core.summary.Summarizable
import
nl.lumc.sasc.biopet.utils.
{
LazyCheck
,
Logging
,
VcfUtils
,
tryToParseNumber
}
import
nl.lumc.sasc.biopet.utils.
{
LazyCheck
,
Logging
,
VcfUtils
,
tryToParseNumber
}
import
nl.lumc.sasc.biopet.utils.config.Configurable
import
nl.lumc.sasc.biopet.core.
{
BiopetCommandLineFunction
,
Reference
,
Version
}
import
org.broadinstitute.gatk.utils.commandline.
{
Input
,
Output
}
import
nl.lumc.sasc.biopet.core.
{
BiopetCommandLineFunction
,
Reference
,
Version
}
import
org.broadinstitute.gatk.utils.commandline.
{
Input
,
Output
}
import
scala.io.Source
...
...
mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
View file @
01d2c652
...
...
@@ -14,7 +14,7 @@
*/
package
nl.lumc.sasc.biopet.pipelines.mapping
import
java.io.
{
File
,
FileOutputStream
}
import
java.io.
{
File
,
FileOutputStream
}
import
com.google.common.io.Files
import
nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
...
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