picard.dedup.metrics

## htsjdk.samtools.metrics.StringHeader
# picard.sam.MarkDuplicates INPUT=[/data/DIV5/SASC/project-049-SNPtypingbac/analysis/runs/sp/samples/8080_2#43/lib_8080_1/8080_2#43-8080_1.bam] OUTPUT=/data/DIV5/SASC/project-049-SNPtypingbac/analysis/runs/sp/samples/8080_2#43/lib_8080_1/8080_2#43-8080_1.dedup.bam METRICS_FILE=/data/DIV5/SASC/project-049-SNPtypingbac/analysis/runs/sp/samples/8080_2#43/lib_8080_1/8080_2#43-8080_1.dedup.metrics TMP_DIR=[/data/DIV5/SASC/project-049-SNPtypingbac/analysis/runs/sp/.queue/tmp] CREATE_INDEX=true    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Wed Feb 18 17:32:02 CET 2015

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
8080_1	5238	603803	115660	1077	5760	26	0.010386	31586584

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.000043
2.0	1.98115
3.0	2.943681
4.0	3.887988
5.0	4.814414
6.0	5.723299
7.0	6.614976
8.0	7.489769
9.0	8.347998
10.0	9.189977
11.0	10.016015
12.0	10.826412
13.0	11.621464
14.0	12.401463
15.0	13.166693
16.0	13.917434
17.0	14.653961
18.0	15.376541
19.0	16.085441
20.0	16.780918
21.0	17.463226
22.0	18.132615
23.0	18.78933
24.0	19.433611
25.0	20.065693
26.0	20.685806
27.0	21.294179
28.0	21.891032
29.0	22.476584
30.0	23.051049
31.0	23.614637
32.0	24.167554
33.0	24.710002
34.0	25.24218
35.0	25.76428
36.0	26.276495
37.0	26.779012
38.0	27.272014
39.0	27.755681
40.0	28.230191
41.0	28.695716
42.0	29.152426
43.0	29.60049
44.0	30.040069
45.0	30.471325
46.0	30.894416
47.0	31.309496
48.0	31.716716
49.0	32.116227
50.0	32.508172
51.0	32.892697
52.0	33.269941
53.0	33.640042
54.0	34.003135
55.0	34.359354
56.0	34.708828
57.0	35.051684
58.0	35.388049
59.0	35.718046
60.0	36.041794
61.0	36.359412
62.0	36.671016
63.0	36.97672
64.0	37.276636
65.0	37.570873
66.0	37.859539
67.0	38.14274
68.0	38.420578
69.0	38.693155
70.0	38.960572
71.0	39.222925
72.0	39.480311
73.0	39.732823
74.0	39.980554
75.0	40.223595
76.0	40.462034
77.0	40.695958
78.0	40.925453
79.0	41.150602
80.0	41.371489
81.0	41.588193
82.0	41.800794
83.0	42.00937
84.0	42.213996
85.0	42.414748
86.0	42.611699
87.0	42.804921
88.0	42.994484
89.0	43.180458
90.0	43.362911
91.0	43.541909
92.0	43.717518
93.0	43.889802
94.0	44.058824
95.0	44.224645
96.0	44.387327
97.0	44.546929
98.0	44.703508
99.0	44.857123
100.0	45.00783