Added Reference Sequence Parser (most of the work done by Gerard Schaafsma), fixed some bugs, and minor additions:
- Added more fixes to ajax/map_variants.php; fixed typo in SQL query and fixed more problems with removed transcripts or UDs without transcripts.
- You can now open the Mutalyzer prediction page from the variant data entry form, by clicking on the mark besides the protein field after a successful prediction has been run.
- LOVD 3.0 can no longer be configured for hg18, but existing installations will still be supported.
- Fixed some typos and textual changes.
- The template footer now flushes completely.
- The quick download format for data lists are now only available for properly authorized users.
- Included version 3.0-beta-07 of official LOVD Reference Sequence Parser script.
  * Compared to LOVD 2.0, the greatest improvement is that this script downloads the reference sequence from Mutalyzer, and therefore no longer requires GenBank files to be uploaded to LOVD.
  * It does not support generating GenBank files, like in LOVD 2.0.
- Fixed incorrect calculation of number of transcripts for the gene VE.


git-svn-id: https://humgenprojects.lumc.nl/svn/LOVD3/trunk@199 a7477d18-a37e-46de-aef1-57953c184492