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Martin Larralde
LightMotif
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86c8b6113ae851b4acc939b8939d86686214b700
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v0.9.1
v0.9.0-post2
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v0.9.0
v0.8.0
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18 results
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Created with Raphaël 2.2.0
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Use substraction in `FrequencyMatrix.to_scoring` method
Release v0.7.2
v0.7.2
v0.7.2
Implement `__getitem__` for row access for matrices of `lightmotif-py`
Allow changing log base in `WeightMatrix.log_odds` method
Add `__len__` implementation for all matrix classes of `lightmotif-py`
Release v0.7.1
v0.7.1
v0.7.1
Fix resizing of striped scores in NEON score implementation
Release v0.7.0
v0.7.0
v0.7.0
Fix compilation of NEON code [ci skip]
Remove `lightmotif-transfac` from workspace [ci skip]
Remove the deprecated `lightmotif-transfac` crate
Remove direct mutable access to `StripedSequence` attributes
Replace direct attribute access with getters in `StripedSequence`
Update `cibuildwheel` used in Actions workflows to latest release
Add benchmark for striping an encoded sequence
Fix issue in NEON platform code
Avoid consuming the scanner in `Scanner.best` method
Use a single `Scanner` type in `lightmotif::scan`
Implement a scanning algorithm for finding hits in a sequence
Reorganize code for striped scores
Use a dedicated type for `ScoringMatrix.score` and refactor code
Revert book-keeping attributes used in `StripedScores`
Add method to build the reverse-complement of a PSSM
Implement back `StripedScores.__len__` and `StripedScores.__getitem__`
Fix release date in `CHANGELOG.md` [ci skip]
Allow changing log base when building `ScoringMatrix` from `WeightMatrix`
Make `StripedScores::sequence_index` take a `MatrixCoordinates` argument
Implement indexing by matrix coordinates in `DenseMatrix`
Fix sequence rows not being updated in `StripedScores::resize`
Cache the number of sequence rows in `StripedScores`
Fix tests and benchmarks to use the new `Maximum` API
Rewrite platform-specific code for updated `Maximum` trait
Update `Maximum::argmax` to return matrix coordinates in the `StripedScores`
Add method to `ScoringMatrix` to score a single sequence position
Remove the `sequence_length` method from `StripedScores`
Rewrite the `Threshold` operation to return matrix coordinates
Fix issue with scoring in SSE2 implementation
Remove platform-specific code for thresholding scores
Reorganize thresholding code so that indices are correct with regard to row range
Add row-based scoring for other platforms and update benchmarks
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