Skip to content
Snippets Groups Projects
Select Git revision
  • main default
  • v0.9.1
  • v0.9.0-post2
  • v0.9.0-post1
  • v0.9.0
  • v0.8.0
  • v0.7.3
  • v0.7.2
  • v0.7.1
  • v0.7.0
  • v0.6.0
  • v0.5.1
  • v0.5.0
  • v0.4.0
  • v0.3.0
  • v0.2.0
  • v0.1.1
  • v0.1.0
18 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.07Nov64131Oct3029283Sep2131Aug30292828Jun252421201917161514138May12Mar11109828Jan15Dec141312112Nov31Aug30109731Jul281828Jun272625201619May17161716151110986432130Apr2928Avoid encoding sequences twice in `lightmotif::sampler` testsReorganize AVX2-specific code to keep indices as `__m256i`Implement `DenseMatrix` iterators without unsafe codeFix `ScoringMatrix::information_content` returning NaN on matrices with `-inf` scoresUse dispatch based on `Alphabet::K` to decide implementation of `score_f32` on AVX2Add project homepage to `pyproject.toml` [ci skip]Fix `information_content` to use all symbols of the alphabetFix test values in `lightmotif::sampler::tests`Add method to build a consensus sequence for a `CountMatrix`Fix implementation of `CountMatrix::entropy` to use all columnsUpdate sampler to avoid discarding active sequences in `zoops` modeUse a dedicated collection in `Sampler` to store active sequencesAdd property to get the number of stored sequences in `CountMatrix`Add builder to create a sampler with various configurationAdd `zoops` mode to Gibbs sampler using information content as criterionStart reorganizing sampler code to allow `zoops` modeDocument the fields of `GibbsGenerator`Remove unused imports from `lightmotif`Rewrite sampler to avoid counting from scratch on every iterationManually implement `Debug` for `StripedScores` to drpo the trait bounds on `C` and `A`Fix `information_content` so they ignore symbols with 0.0 frequencyAdd convenience methods for `SymbolCount` and fix `StripedSequence` implementationAdd `information_content` methods to `WeightMatrix` and `ScoringMatrix`Update sampler to avoid allocating temporary weights arrayImplement `AsRef<Vec<T>>` for `Scores<T>`Reorganize Gibbs sampler code into iterator objectAdd initial implementation of a Gibbs sampler for motif detectionAdd missing `Background` import in `lightmotif::seq`Implement `IndexMut<MatrixCoordinates>` for `DenseMatrix`Use GitHub Gist to get the related projects badges from the documentation [ci skip]Fix build for Python documentation [ci skip]Skip `aarch64` Python packaging unless building a releaseAdd `before-all` configuration for `cibuildwheel` on MacOSFix Rust download command for `cibuildwheel`Update CI configuration for Python package to use a single runner per architectureUse `maturin` to build Python bindings instead of `setuptools-rust`Prevent GitHub Actions from releasing to AUR before upload to PyPI [ci skip]Release v0.9.1v0.9.1v0.9.1Fix deprecated versions in GitHub ActionsSetup deployment of Arch User Repository package