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Martin Larralde
LightMotif
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47cd1dceab626c4ab2f12e2063c00490c734d6c3
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v0.9.1
v0.9.0-post2
v0.9.0-post1
v0.9.0
v0.8.0
v0.7.3
v0.7.2
v0.7.1
v0.7.0
v0.6.0
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18 results
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Created with Raphaël 2.2.0
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Fix unused imports in `lightmotif::pli` and reorganize unit tests
Add SSE2 implementation of the `Encode` pipeline operation
Fix AVX2 implementation of `Maximum::argmax`
Add unit tests for `lightmotif::scan::Scanner`
Implement `Score<u8, Dna>` for the NEON platform
Fix issues with NEON code in pipeline and tests
Reorganise code for benchmarks
Fix build of platform specific code on Arm platforms
Implement `Score<u8, Dna>` for the AVX2 platform
Reorganize tests in `lightmotif` crate
Reorganize tests for `Stripe` implementations
Add AVX2 implementation of `Score<u8>` operation
Avoid using option type in default `Maximum::argmax` implementation
Make `Score` pipeline trait generic over the score type
Make `Maximum` and `Threshold` pipeline traits generic over the element type
Make `StripedScores` generic over the score type
Make `lightmotif::scores::Scores` generic over the element type
Use marker trait for `DiscreteMatrix` element types
Add `DiscreteMatrix` type to `lightmotif::pwm`
Cache the `Pipeline` used in `lightmotif::scan::Scanner`
Fix requirement for `Debug` element in `Clone` implementation of `DenseMatrix`
Release v0.7.3
v0.7.3
v0.7.3
Add documentation to the `transfac` module of `lightmotif-io`
Use `Error::source` instead of `Error::cause` in `lightmotif-io`
Improve `lightmotif-io` error type with `Arc` for internal errors and support for `Clone`
Improve documentation of `lightmotif_io::transfac`
Document methods of `jaspar16::Record` in `lightmotif-io`
Use aligned loads in AVX2 implementation of `Score`
Fix incorrect alignment handling in `DenseMatrix`
Fix default alignment used for x86-64 and Aarch64
Manually implement `Clone` for `DenseMatrix` to enforce memory alignment
Hotfix issue with alignment of data in AVX2 code
Rename JASPAR (2016) benchmark in `lightmotif-io`
Make AVX2 implementation of `score_into` with `gather` more generic
Use `_mm256_permutevar8x32_ps` in AVX2 `Score` to avoid special case for default Dna symbol
Add helper functions to read any format in `lightmotif-io`
Add `lightmotif-io` module to parse the raw JASPAR format
Fix issue with scoring of an empty range of rows
Fix striping of empty sequence panicking with AVX2 implementation
Remove unused file from `lightmotif-tfmpvalue` [ci skip]
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