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Created with Raphaël 2.2.07Mar625Feb1127Jan196Dec13Nov128764131Oct3029283Sep2131Aug30292828Jun252421201917161514138May12Mar11109828Jan15Dec141312112Nov31Aug30109731Jul281828Jun272625201619May17161716151110986432130Apr2928Fix pointer variable confusion in `score_f32_neon`mainmainFix `dense::test::stride` always expecting 32 bytes alignmentRemove `check` stage from `rust.yml` Actions workflowRun tests on Aarch64 in GitHub Actions to test NEON codePin MacOS runner version used in GitHub Actions to `macos-13`Replace `Py_NewRef` with manual `Py_INCREF` calls in `__getbuffer__` codeFix deprecated API use in `lightmotif/tests/unittest.rs`Add constant and skip `memoryview`-based tests when compiling Python with Limited APIAdd support for building Python bindings in Limited API modeBump `pyo3` dependency to `v0.23`Use constant pointers to avoid matrix indexing inside pipeline hot loopsAdd blanket implementation for `&T` where `T` is `SymbolCount`Apply `clippy` suggested fixes to `lightmotif` modulesRemove `const fn` declaration where it makes no senseUse `_mm256_broadcast_ps` in `score_f32_avx2_permute` to reduce data latencyBump MacOS runner version used in GitHub ActionsUpdate `cover` step of `rust.yml` Actions workflow to run with up-to-date `cargo-tarpaulin`Use native GitHub Actions runners to build `aarch64` wheelsBump `nom` dependency of `lightmotif-io` to `v8.0`Update `dna.rs` benchmark to reference the PSSM matrix in a constant variableAdd SVG figure with method detail to `docs/_static`Always pre-allocate additional rows when creating a new `StripedSequence` for wrap rowsAllow accessing and configuring the row capacity of a `DenseMatrix`Make the `ravel` methods of `DenseMatrix` unsafe as they may expose uninitialized elementsAdd a trait to compute correlations for `lightmotif::pwm` matricesUse macros to refactor common code in `lightmotif-py`Fix slow implementation of `SymbolCount::count_symbols` fo r `StripedSequence`Inline some short functions in `lightmotif` core modulesUse default column type based on current platform in most `lightmotif` typesAdd dedicated trait for positive column dimensions in `lightmotif`Add tests for `SymbolCount` for `EncodedSequence` and `StripedSequence`Use macros in `lightmotif-py` to reduce duplicated code between alphabetsAllow accessing the sampled survival function distribution for a PSSM in `lightmotif-py`Use the `Dispatch` columns for matrices in `lightmotif-py`Add new `ScoreDistribution` Python type to help with p-value computationUpdate type hints to show different p-value methodsUpdate `lightmotif-py` to use the MEME implementation of p-value computationMark most `ScoreDistribution` methods as `inline`Add small example to `lightmotif::pwm::dist` documentationAdd `ScoringMatrix::to_score_distribution` method and document `ScoreDistribution` methods