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Martin Larralde
LightMotif
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lut-aarch64
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Mark support for MEME file format in `lightmotif-io`
main
main
Release v0.10.0
v0.10.0
v0.10.0
Update category in `Cargo.toml` files
Skip use of NEON for `Score<Protein>` as generic code is faster
Fix benchmark compilation for Arm platforms
Run benches for Aarch64 in CI temporarily
Use `vld4q_u8` to handle de-interleaving loads in `score_f32_neon_vqtbl1q`
Update NEON scoring code
Implement look-up table workaround for Aarch64 NEON f32-scoring
Add detection of alphabet from MEME files
Fix parsing of MEME columns not being in the same order as alphabet
Add more tests to `lightmotif_io::meme::parse`
Don't require default `lightmotif` features in other crates
Update `lightmotif-py` documentation to display MEME motifs
Implement parsing of MEME files in `lightmotif-py`
Update MEME parser and add support for extracting URL if any
Fix conversion of `InvalidData` error in `lightmotif-py`
Implement parsing of format version and background from MEME files
Fix greedy parsing of motif matrices in MEME files
Add `new_unchecked` constructor to `Background`
Add `new_unchecked` constructors to matrix types
Update error type of `lightmotif-io` to add message to invalid data variant
Add basic parser for MEME format files
Don't require `lightmotif` default features in `lightmotif-io`
Skip use of NEON for `Score<Protein>` as generic code is faster
lut-aarch64
lut-aarch64
Fix benchmark compilation for Arm platforms
Run benches for Aarch64 in CI temporarily
Use `vld4q_u8` to handle de-interleaving loads in `score_f32_neon_vqtbl1q`
Update NEON scoring code
Implement look-up table workaround for Aarch64 NEON f32-scoring
Fix pointer variable confusion in `score_f32_neon`
Fix `dense::test::stride` always expecting 32 bytes alignment
Remove `check` stage from `rust.yml` Actions workflow
Run tests on Aarch64 in GitHub Actions to test NEON code
Pin MacOS runner version used in GitHub Actions to `macos-13`
Replace `Py_NewRef` with manual `Py_INCREF` calls in `__getbuffer__` code
Fix deprecated API use in `lightmotif/tests/unittest.rs`
Add constant and skip `memoryview`-based tests when compiling Python with Limited API
Add support for building Python bindings in Limited API mode
Bump `pyo3` dependency to `v0.23`
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