Commits · b4408fc4a9ef85e133a6976f76f515b8bd95eae9 · Martin Larralde / LightMotif · GitLab

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May 10, 2023
- Add SSSE3 implementation of the maximum score search algorithm · b4408fc4
  Martin Larralde authored 1 year ago
  
  b4408fc4
- Add method to extract the best position from a `StripedScores` matrix with AVX2 · 7f70de3b
  Martin Larralde authored 1 year ago
  
  7f70de3b
May 06, 2023
- Fix DNA benchmark and update results `README.md` [ci skip] · fa0657e5
  Martin Larralde authored 1 year ago
  
  fa0657e5
May 02, 2023
- Rename `ProbabilityMatrix` to `FrequencyMatrix` and improve public API · 557d01e4
  Martin Larralde authored 1 year ago
  
  557d01e4
May 01, 2023
- Rename `DnaSymbol` to `Nucleotide` and `DnaAlphabet` to `Dna` · fb8eee06
  Martin Larralde authored 1 year ago
  
  fb8eee06
Apr 30, 2023
- Add `FromStr` implementation for `EncodedSequence` · 19516f82
  Martin Larralde authored 1 year ago
  
  19516f82
- Add SSSE3 implementation using less optimized masked additions · 9f3f67e4
  Martin Larralde authored 1 year ago
  
  9f3f67e4
- Add benchmarks comparing to `bio::pattern_matching::pssm` · 504c47c2
  Martin Larralde authored 1 year ago
  
  504c47c2
- Use generic types as pipeline input to support wrapper structs · 7869cd38
  Martin Larralde authored 1 year ago
  
  7869cd38
- Remove `name` attribute from matrices struct · 9e6c6df2
  Martin Larralde authored 1 year ago
  
  9e6c6df2
- Add benchmark for scoring an Escherichia coli genome · 805f6f02
  Martin Larralde authored 1 year ago
  
  805f6f02