Commits · a9727b9ffb7ead4875712be892743c5265e06af5 · Martin Larralde / LightMotif · GitLab

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Aug 31, 2023
- Add buffer protocol for `EncodedSequence` and `StripedSequence` · a9727b9f
  Martin Larralde authored 1 year ago
  
  a9727b9f
- Add support for indexing an `EncodedSequence` · 26c650f5
  Martin Larralde authored 1 year ago
  
  26c650f5
- Implement the buffer protocol for Python `StripedSequence` · 6dc317ee
  Martin Larralde authored 1 year ago
  
  6dc317ee
- Update `Encode` trait to return an `EncodedSequence` · 453bdc99
  Martin Larralde authored 1 year ago
  
  453bdc99
- Update Python wrapper to use the dynamic dispatch pipeline · 6830cdb6
  Martin Larralde authored 1 year ago
  
  6830cdb6
Aug 10, 2023
- Release v0.4.0 · 5cf94f5d
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.4.0 v0.4.0
  
  5cf94f5d
- Add `max` and `argmax` methods to the Python `StripedScores` interface · 4fd9360b
  Martin Larralde authored 1 year ago
  
  4fd9360b
Jul 28, 2023
- Update benchmark results in `README.md` [ci skip] · 9bdb14ee
  Martin Larralde authored 1 year ago
  
  9bdb14ee
Jul 18, 2023
- Add `StripedScores.threshold` method to `lightmotif-py` · 2670dee0
  Martin Larralde authored 1 year ago
  
  2670dee0
- Rename `DenseMatrix::columns_effective` to `DenseMatrix::stride` · b9504e91
  Martin Larralde authored 1 year ago
  
  b9504e91
- Add documentation pages for missing `lightmotif-py` objects · 9fe5d5ae
  Martin Larralde authored 1 year ago
  
  9fe5d5ae
- Improve documentation of Python objects in `lightmotif-py` · f57957fd
  Martin Larralde authored 1 year ago
  
  f57957fd
- Add links to other crates in project `README.md` [ci skip] · a82ecced
  Martin Larralde authored 1 year ago
  
  a82ecced
- Add configuration files to build documentation on ReadTheDocs · 4b901d09
  Martin Larralde authored 1 year ago
  
  4b901d09
- Avoid error on missing symbols in `CountMatrix.__init__` · 90d3b2cb
  Martin Larralde authored 1 year ago
  
  90d3b2cb
Jun 25, 2023
- Release v0.3.0 · 48ce08e6
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.3.0 v0.3.0
  
  48ce08e6
Jun 20, 2023
- Add Python benchmarks against MOODS [ci skip] · 6de22b26
  Martin Larralde authored 1 year ago
  
  6de22b26
Jun 16, 2023
- Add dict-based constructor for `CountMatrix` Python class · 8d1d59e2
  Martin Larralde authored 1 year ago
  
  8d1d59e2
- Add `__eq__` method to matrices in `lightmotif-py` · 8da67d92
  Martin Larralde authored 1 year ago
  
  8da67d92
May 17, 2023
- Update `README.md` with up-to-date benchmark results [ci skip] · cde4077c
  Martin Larralde authored 1 year ago
  
  cde4077c
- Release v0.2.0 · fc274e33
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.2.0 v0.2.0
  
  fc274e33
- Re-export `typenum` crate in the `lightmotif::num` module · 6bb7ce31
  Martin Larralde authored 1 year ago
  
  6bb7ce31
- Update Python wrapper to use NEON backend when supported · fee4ab59
  Martin Larralde authored 1 year ago
  
  fee4ab59
May 16, 2023
- Update `WeightMatrix.calculate` in Python version to use SSE2 as a fallback · a7970f44
  Martin Larralde authored 1 year ago
  
  a7970f44
- Update `lightmotif-py` and `lightmotif-transfac` with the new pipeline API · 12a2db0e
  Martin Larralde authored 1 year ago
  
  12a2db0e
May 15, 2023
- Update `lightmotif-py` with the new `typenum` API · fd54401d
  Martin Larralde authored 1 year ago
  
  fd54401d
May 11, 2023
- Add links to both versions of the library in `README.md` [ci skip] · c2042d29
  Martin Larralde authored 1 year ago
  
  c2042d29
- Add shortcut method to encode and stripe a text sequence · bf846770
  Martin Larralde authored 1 year ago
  
  bf846770
May 06, 2023
- Fix DNA benchmark and update results `README.md` [ci skip] · fa0657e5
  Martin Larralde authored 1 year ago
  
  fa0657e5
May 04, 2023
- Update `setup.py` to allow inplace extension compilation · d3813cad
  Martin Larralde authored 1 year ago
  
  d3813cad
- Remove multiple compilation units from `lightmotif-py` · 9beab6cd
  Martin Larralde authored 1 year ago
  
  9beab6cd
- Release v0.1.1 · ab2ee8f9
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.1.1 v0.1.1
  
  ab2ee8f9
- Make `unittest.rs` wrapper use the generic Python implementation · 2daa049e
  Martin Larralde authored 1 year ago
  
  2daa049e
- Setup a helper crate to perform CPU feature detection on Python module import · 85627565
  Martin Larralde authored 1 year ago
  
  85627565
- Remove `built` dependency from `lightmotif-py` to simplify build process · d5ea9458
  Martin Larralde authored 1 year ago
  
  d5ea9458
- Fix conditional build of AVX2 module · 41857327
  Martin Larralde authored 1 year ago
  
  41857327
- Improve documentation and metadata across all crates · 83998d54
  Martin Larralde authored 1 year ago
  
  83998d54
May 03, 2023
- Remove `archspec` requirement in `lightmotif-py` · 7250d117
  Martin Larralde authored 1 year ago
  
  7250d117
- Update `setup.py` to build a fat wheel with both AVX2 and generic library · f82ca5b5
  Martin Larralde authored 1 year ago
  
  f82ca5b5
- Reorganize project to allow building Python package from the main repository · 5ad505bd
  Martin Larralde authored 1 year ago
  
  5ad505bd