Commits · 80ed550b033c85e9f8f77ec078e75c8e346b5c57 · Martin Larralde / LightMotif · GitLab

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Dec 13, 2023
- Release v0.6.0 · 80ed550b
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.6.0 v0.6.0
  
  80ed550b
- Add a disclaimer that `lightmotif-transfac` is deprecated · b23e324c
  Martin Larralde authored 1 year ago
  
  b23e324c
- Improve documentation of `lightmotif-tfmpvalue` crate · 3033d632
  Martin Larralde authored 1 year ago
  
  3033d632
- Compute optimal matrix column permutations in `TfmPvalue` · e135e36e
  Martin Larralde authored 1 year ago
  
  e135e36e
- Use a fast hashing algorithm for `i64` keys in `lightmotif-tfmpvalue` · 723ed024
  Martin Larralde authored 1 year ago
  
  723ed024
- Invert decay in `lightmotif-tfmpvalue` to reduce rounding errors in granularity · 64b52aa0
  Martin Larralde authored 1 year ago
  
  64b52aa0
- Add `lightmotif-io` crate to the crates published in `rust.yml` Actions workflow · 103f0caf
  Martin Larralde authored 1 year ago
  
  103f0caf
- Fix outdated imports in `lightmotif-io` tests · 0e0ff350
  Martin Larralde authored 1 year ago
  
  0e0ff350
- Add benchmark for the JASPAR 2016 parser of `lightmotif-io` · a60f0fd7
  Martin Larralde authored 1 year ago
  
  a60f0fd7
- Add `README.md` file to `lightmotif-io` · fbb3645a
  Martin Larralde authored 1 year ago
  
  fbb3645a
- Remove code from `lightmotif-transfac` and re-export `lighmotif-io` TRANSFAC module · 63e3d260
  Martin Larralde authored 1 year ago
  
  63e3d260
- Move TRANSFAC parser with other parser in `lightmotif-io` crate · 4e680bb3
  Martin Larralde authored 1 year ago
  
  4e680bb3
Dec 12, 2023
- Make `ScoringMatrix::max_score` and `ScoringMatrix::min_score` ignore `N` column · 3a734572
  Martin Larralde authored 1 year ago
  
  3a734572
- Add parser implementation for JASPAR 2016 count matrices · c19c3686
  Martin Larralde authored 1 year ago
  
  c19c3686
- Add documentation for the UniPROBE record parser · 0d3b7ca0
  Martin Larralde authored 1 year ago
  
  0d3b7ca0
- Add methods to get frequencies from a TRANSFAC `Record` · 993f9ef4
  Martin Larralde authored 1 year ago
  
  993f9ef4
- Make data matrix optional in TRANSFAC `Record` · 03890b44
  Martin Larralde authored 1 year ago
  
  03890b44
- Rewrite TRANSFAC parser to support frequency matrices · b62696c2
  Martin Larralde authored 1 year ago
  
  b62696c2
- Add basic line-based parser for UniPROBE matrices · bb83b10e
  Martin Larralde authored 1 year ago
  
  bb83b10e
- Add getter to the raw data of a `FrequencyMatrix` · 8b5f5a6f
  Martin Larralde authored 1 year ago
  
  8b5f5a6f
Dec 11, 2023
- Make `CountMatrix::new` validate consistency of row sums · d560ad86
  Martin Larralde authored 1 year ago
  
  d560ad86
- Add validating constructor to `lightmotif::pwm::FrequencyMatrix` · b182e3b7
  Martin Larralde authored 1 year ago
  
  b182e3b7
- Add new `lightmotif-io` crate to implement multiple parser formats · 0c4f035b
  Martin Larralde authored 1 year ago
  
  0c4f035b
Nov 02, 2023
- Add `pymemesuite` to benchmark in Python `README.md` [ci skip] · 55f18b9d
  Martin Larralde authored 1 year ago
  
  55f18b9d
Aug 31, 2023
- Release v0.5.1 · 4a642c6a
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.5.1 v0.5.1
  
  4a642c6a
- Add step to check cross-compilation in `rust.yml` Actions workflow · dc237022
  Martin Larralde authored 1 year ago
  
  dc237022
- Fix compilation of Arm code · e2c93222
  Martin Larralde authored 1 year ago
  
  e2c93222
- Release v0.5.0 · 94ac933a
  Martin Larralde authored 1 year ago
  
  View commits for tag v0.5.0 v0.5.0
  
  94ac933a
- Skip buffer protocol tests on PyPy · 8bbcecb4
  Martin Larralde authored 1 year ago
  
  8bbcecb4
- Improve `Threshold` for AVX2 using streaming stores · 5703379d
  Martin Larralde authored 1 year ago
  
  5703379d
- Keep buffer uninitialized when allocating output in `Threshold` implementations · a419d5a3
  Martin Larralde authored 1 year ago
  
  a419d5a3
- Add copy protocol to `EncodedSequence` and `StripedSequence` · 5d191584
  Martin Larralde authored 1 year ago
  
  5d191584
- Add buffer protocol for `EncodedSequence` and `StripedSequence` · a9727b9f
  Martin Larralde authored 1 year ago
  
  a9727b9f
- Add support for indexing an `EncodedSequence` · 26c650f5
  Martin Larralde authored 1 year ago
  
  26c650f5
- Implement the buffer protocol for Python `StripedSequence` · 6dc317ee
  Martin Larralde authored 1 year ago
  
  6dc317ee
- Update `Encode` trait to return an `EncodedSequence` · 453bdc99
  Martin Larralde authored 1 year ago
  
  453bdc99
- Add a `PartialEq` implementation for `EncodedSequence` · 5aab90ca
  Martin Larralde authored 1 year ago
  
  5aab90ca
- Require `Symbol` implementors to be `Eq` · 1858af0e
  Martin Larralde authored 1 year ago
  
  1858af0e
- Add some convenience methods and traits to `TfmPvalue` · a8b8afd3
  Martin Larralde authored 1 year ago
  
  a8b8afd3
- Make `TfmPvalue` generic over the reference to the `ScoringMatrix` · 9086f036
  Martin Larralde authored 1 year ago
  
  9086f036