Release v0.7.3

CHANGELOG.md

@@ -6,7 +6,31 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/lightmotif/compare/v0.7.2...HEAD
+[Unreleased]: https://github.com/althonos/lightmotif/compare/v0.7.3...HEAD
+
+
+## [v0.7.3] - 2024-06-17
+[v0.7.3]: https://github.com/althonos/lightmotif/compare/v0.7.2...v0.7.3
+
+### Added
+
+#### `lightmotif-io`
+- `lightmotif_io::jaspar` to read matrices in raw JASPAR format.
+- Implementation of `Clone` and `Error` for the `lightmotif_io::error::Error` type.
+
+### Changed
+
+#### `lightmotif`
+- Use logarithmic subtraction in `FrequencyMatrix::to_scoring`.
+- Use `_mm256_permutevara8x32_ps` instead of `_mm256_permutevar_ps` in AVX2 implementation to avoid special handling of unknown matric character `N`.
+
+### Fixed
+
+#### `lightmotif`
+- Striping of empty sequences panicking on AVX2 implementation.
+- Scoring of empty range of rows panicking.
+- Invalid alignment of data in AVX2 code.
+- `Clone` implementation of `DenseMatrix` not preserving memory alignment.
 
 
 ## [v0.7.2] - 2024-06-14

lightmotif-bench/Cargo.toml

 [package]
 name = "lightmotif-bench"
-version = "0.7.2"
+version = "0.7.3"
 edition = "2021"
 publish = false
 

lightmotif-io/Cargo.toml

 [package]
 name = "lightmotif-io"
-version = "0.7.2"
+version = "0.7.3"
 authors = ["Martin Larralde <martin.larralde@embl.de>"]
 edition = "2021"
 license = "MIT"
@@ -20,4 +20,4 @@ generic-array = "1.0"
 
 [dependencies.lightmotif]
 path = "../lightmotif"
-version = "0.7.2"
+version = "0.7.3"

lightmotif-py/Cargo.toml

 [package]
 name = "lightmotif-py"
-version = "0.7.2"
+version = "0.7.3"
 authors = ["Martin Larralde <martin.larralde@embl.de>"]
 edition = "2021"
 license = "MIT OR GPL-3.0-or-later"
@@ -17,11 +17,11 @@ path = "lightmotif/lib.rs"
 
 [dependencies.lightmotif]
 path = "../lightmotif"
-version = "0.7.2"
+version = "0.7.3"
 [dependencies.lightmotif-tfmpvalue]
 optional = true
 path = "../lightmotif-tfmpvalue"
-version = "0.7.2"
+version = "0.7.3"
 [dependencies]
 pyo3 = "0.18.3"
 generic-array = "1.0.0"

lightmotif-py/lightmotif/__init__.py

-__version__ = "0.7.2"
+__version__ = "0.7.3"
 
 from . import lib
 from .lib import (

lightmotif-tfmpvalue/Cargo.toml

 [package]
 name = "lightmotif-tfmpvalue"
-version = "0.7.2"
+version = "0.7.3"
 authors = ["Martin Larralde <martin.larralde@embl.de>"]
 edition = "2021"
 license = "GPL-3.0-or-later"
@@ -13,5 +13,5 @@ keywords = ["bioinformatics", "motif", "pssm", "pvalue"]
 
 [dependencies.lightmotif]
 path = "../lightmotif"
-version = "0.7.2"
+version = "0.7.3"
 

lightmotif/Cargo.toml

 [package]
 name = "lightmotif"
-version = "0.7.2"
+version = "0.7.3"
 authors = ["Martin Larralde <martin.larralde@embl.de>"]
 edition = "2021"
 license = "MIT"