README

Platform       : Illumina HiSeq (simulated)
Molecular type : DNA
Capture kit    : custom

Owner: J.F.J. Laros <J.F.J. Laros@lumc.nl>

Gathered by: J.F.J. Laros <J.F.J. Laros@lumc.nl>

Notes:
python makeFastq.py mutate -o out_half -l 100 -n 330000 -i input.txt
python makeFastq.py mutate -o out -l 100 -n 660000 -i input.txt

child_1.fq, child_2.fq, child.txt:
python ../src/sim-reads/sim-reads/makeFastq.py mutate -o child -l 100 -n 660000 -i variants.txt

reference.fa:
fastools get -s 136800000 -p 139000000 reference.fa NC_000008.10 j.f.j.laros@lumc.nl

father_1.fq, father_2.fq, father.txt:
python ../src/sim-reads/sim-reads/makeFastq.py local -o father -l 100 -n 660000 -r reference.fa