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Created with Raphaël 2.2.016Dec943226Nov251912425Oct24232227Aug2614831Jul15May718Apr29Mar2719187Jun8May25Apr16312Mar116Feb13Set development versiondeveldevelPackage version 1.1.0v1.1.0 masterv1.1.0 masterAdd Docker fileFix packagingMerge branch 'testing' into develMake sure the parent output folder existsMerge branch 'testing' into 'devel'The discordant VCF file is gzippedUse get_header_type to determine if RGQ is presentWrite to stats file instead of using printUpdate min-depth to integertox automatically calls pip install '.'Write discordant variants to valid vcf fileMerge branch 'testing' of git.lumc.nl:klinische-genetica/capture-lumc/vtools into testingAdd support for RQC annotations to be used as GQAdd test cases for missing ALT in call vcfFixed bug with partial no callsAdd test for a rare bug with partial variantsAdd test cases where the ALT and REF differAdd support for parital callsExtract genotypes to support conflicting ALT callsAdd check for non-diploid callsClean up test dataAdd check for decomposed callsConvert single use fixtures to regular testsAdd check for phased callsCompare allele genotypes directlyMerge branch 'testing' of git.lumc.nl:klinische-genetica/capture-lumc/vtools into testingDo not use '-' as a stand in for stdoutUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlAdd comment for decomposed variantsAdd test cases for truncated call vcfProperly count 'no call' sitesAdd tests for quality and depth filterAdd testcase for every field in the outputAdd gatk test file and rename test scriptAdd real test for site_concordancyAdd dummy test with tox