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Klinische Genetica
capture-lumc
vtools
Commits
5b51b794
Commit
5b51b794
authored
Jul 31, 2019
by
van den Berg
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Reword usage message for --discordant
parent
21f6084c
Pipeline
#2729
failed with stage
in 22 seconds
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README.md
README.md
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vtools/cli.py
vtools/cli.py
+1
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README.md
View file @
5b51b794
...
...
@@ -155,9 +155,9 @@ Options:
-ps
,
--positive-samples
TEXT Sample
(
s
)
in
positive-vcf to consider. May be
called multiple
times
[
required]
-s
,
--stats
PATH Path to output stats json file
[
required]
-dc
,
--discordant
PATH Path to output
the discordant VCF records to
--help
Show this message and exit
.
```
-dc
,
--discordant
PATH Path to output
discordant VCF file
--help
Show this message and
exit
```
## License
...
...
vtools/cli.py
View file @
5b51b794
...
...
@@ -34,7 +34,7 @@ from .gcoverage import RefRecord, region_coverages
@
click
.
option
(
"-s"
,
"--stats"
,
type
=
click
.
Path
(
writable
=
True
),
help
=
"Path to output stats json file"
,
required
=
True
)
@
click
.
option
(
"-dc"
,
"--discordant"
,
type
=
click
.
Path
(
writable
=
True
),
help
=
"Path to output
the discordant VCF records to
"
,
help
=
"Path to output
discordant VCF file
"
,
required
=
False
)
def
evaluate_cli
(
call_vcf
,
positive_vcf
,
call_samples
,
positive_samples
,
stats
,
discordant
):
...
...
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