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Commit 5b51b794 authored by van den Berg's avatar van den Berg
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Reword usage message for --discordant

parent 21f6084c
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1 merge request!4Add output of discordant variants
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...@@ -155,9 +155,9 @@ Options: ...@@ -155,9 +155,9 @@ Options:
-ps, --positive-samples TEXT Sample(s) in positive-vcf to consider. May be -ps, --positive-samples TEXT Sample(s) in positive-vcf to consider. May be
called multiple times [required] called multiple times [required]
-s, --stats PATH Path to output stats json file [required] -s, --stats PATH Path to output stats json file [required]
-dc, --discordant PATH Path to output the discordant VCF records to -dc, --discordant PATH Path to output discordant VCF file
--help Show this message and exit. --help Show this message and exit
``` ```
## License ## License
......
...@@ -34,7 +34,7 @@ from .gcoverage import RefRecord, region_coverages ...@@ -34,7 +34,7 @@ from .gcoverage import RefRecord, region_coverages
@click.option("-s", "--stats", type=click.Path(writable=True), @click.option("-s", "--stats", type=click.Path(writable=True),
help="Path to output stats json file", required=True) help="Path to output stats json file", required=True)
@click.option("-dc", "--discordant", type=click.Path(writable=True), @click.option("-dc", "--discordant", type=click.Path(writable=True),
help="Path to output the discordant VCF records to", help="Path to output discordant VCF file",
required=False) required=False)
def evaluate_cli(call_vcf, positive_vcf, call_samples, positive_samples, stats, def evaluate_cli(call_vcf, positive_vcf, call_samples, positive_samples, stats,
discordant): discordant):
......
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