• van den Berg's avatar
    Add check for decomposed calls · 86bd745b
    van den Berg authored
    Before, we would iterate over decomposed called variants until we found
    the variant where the REF and ALT matched the one in the positive vcf.
    However, this meant that sites where the called vcf had different ALTs
    could not be processed.
    To resolve this, we had to drop support for decomposed variants.