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Created with Raphaël 2.2.029Jan2417Dec2Nov14Oct1320May1815149864321Use an image where the extra line bug is fixednewerimagesnewerimagesRemove effect of rogue print statementUpdate vcf2variants command lineUse newer imagesMerge branch 'fix-tests' into 'master'mastermasterMake environment really specificActivate the environment after installing itInstall the conda environment when it is not presentRemove local rulesv1.0.0v1.0.0Merge branch '1-disease-code-can-be-n' into 'master'Update path to test configAdd test for newline as disease codeAdd quotes around disease codeMerge branch 'client_0.9' into 'master'Use latest version of varda2-client.Merge branch 'devel' into 'master'Add tests for removal of ALTs that are not calledAdd settings for distance and threshold to the configurationMove containers to dictionaryMake default parameters explicit.Add sge cluster configurationWrite output to sample/varda folderAdd test for GIAB coverageAdd tests to check * variants are removedMerge branch 'gitlab-ci' into develAdd tests removing multiallelic ALTsKeep temporary output files for testingAdd tests for removal of ALTs that are not calledMerge branch 'gitlab-ci' into 'devel'Gitlab ciClean up vcf headers for test dataAdd integration testRemove basetemp from dry-runUpdate script anchorExecute dry-run tests on docker runnerAdd test configAdd vcf-to-varda conda envRun dry-run on the slurm runnerKeep workflow dir on failureAdd gitlab-ci file