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Created with Raphaël 2.2.029Jan2417Dec2Nov14Oct1320May15149864321Use an image where the extra line bug is fixednewerimagesnewerimagesRemove effect of rogue print statementUpdate vcf2variants command lineUse newer imagesMerge branch 'fix-tests' into 'master'mastermasterMake environment really specificActivate the environment after installing itInstall the conda environment when it is not presentRemove local rulesv1.0.0v1.0.0Merge branch '1-disease-code-can-be-n' into 'master'Update path to test configAdd test for newline as disease codeAdd quotes around disease codeMerge branch 'client_0.9' into 'master'Use latest version of varda2-client.Merge branch 'devel' into 'master'Add tests for removal of ALTs that are not calledRun dry-run on the slurm runnerKeep workflow dir on failureAdd gitlab-ci fileAdd initial pytest-workflow tests and dataUpdate snakemake to latest versionAdd conda environment for the main pipelineMerge branch 'master' of git.lumc.nl:klinische-genetica/capture-lumc/vcf-to-vardaNew client version.Add info about token and input format.Update varda2-client.New version captures the whole response.Moved to wrapper repo.Merge branch 'master' of git.lumc.nl:klinische-genetica/capture-lumc/vcf-to-vardaMark intermediate files as temporary so that they are removed.Use a configuration file.Script to create config from sample group info.Parametrize meta data and enforce token env var.Use rule dependency again.Add submit to end of pipeline.Use rule dependencies for output.Run cthreepo last.Updated versions of containers.Rule dependencies.