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Created with Raphaël 2.2.029Jan2417Dec2Nov14Oct1320May1815149864321Use an image where the extra line bug is fixednewerimagesnewerimagesRemove effect of rogue print statementUpdate vcf2variants command lineUse newer imagesMerge branch 'fix-tests' into 'master'mastermasterMake environment really specificActivate the environment after installing itInstall the conda environment when it is not presentRemove local rulesv1.0.0v1.0.0Merge branch '1-disease-code-can-be-n' into 'master'Update path to test configAdd test for newline as disease codeAdd quotes around disease codeMerge branch 'client_0.9' into 'master'Use latest version of varda2-client.Merge branch 'devel' into 'master'Add tests for removal of ALTs that are not calledAdd sge cluster configurationWrite output to sample/varda folderAdd test for GIAB coverageAdd tests to check * variants are removedMerge branch 'gitlab-ci' into develAdd tests removing multiallelic ALTsKeep temporary output files for testingAdd tests for removal of ALTs that are not calledMerge branch 'gitlab-ci' into 'devel'Gitlab ciClean up vcf headers for test dataAdd integration testRemove basetemp from dry-runUpdate script anchorExecute dry-run tests on docker runnerAdd test configAdd vcf-to-varda conda envRun dry-run on the slurm runnerKeep workflow dir on failureAdd gitlab-ci fileAdd initial pytest-workflow tests and dataUpdate snakemake to latest versionAdd conda environment for the main pipeline