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Klinische Genetica
capture-lumc
vcf-to-varda
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!4
Resolve "Disease code can be "\n""
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Resolve "Disease code can be "\n""
1-disease-code-can-be-n
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van den Berg
requested to merge
1-disease-code-can-be-n
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4 years ago
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#1 (closed)
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4 years ago
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van den Berg
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c8d341f4
Add quotes around disease code
· c8d341f4
van den Berg
authored
4 years ago
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@@ -109,10 +109,11 @@ rule submit:
"{sample}/varda/{sample}_response.json"
container:
containers["varda2-client"]
shell:
"
varda2-client submit \
--disease-code {params.disease_code} \
shell:
"""
varda2-client submit \
--disease-code
"
{params.disease_code}
"
\
--lab-sample-id {params.sample_id} \
--coverage {input.coverage} \
--variants-file {input.variants} \
> {output}"
> {output}
"""
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