@@ -39,5 +39,6 @@ chrM 150 . T C 5149.77 . AC=2;AF=1.00;AN=2;DP=130;ExcessHet=3.0103;FS=0.000;MLEA
chrM 152 . T C 5149.77 . AC=2;AF=1.00;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.63;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,113:113:99:1|1:150_T_C:5178,352,0
chrM 195 . C T,* 690.21 . AC=0,1;AF=0.00,0.500;AN=2;BaseQRankSum=-1.150e+00;ClippingRankSum=0.00;DP=17;ExcessHet=3.9794;FS=8.872;MQ=39.83;MQRankSum=-9.210e-01;QD=21.57;ReadPosRankSum=-4.390e-01;SOR=2.038 GT:AD:DP:GQ:PL 0/2:9,0,8:17:99:303,330,1227,0,897,873
chrM 410 . A C,G 4849.13 . AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.00;DP=76;ExcessHet=3.0103;FS=6.027;MQ=52.15;MQRankSum=-4.344e+00;QD=22.98;ReadPosRankSum=0.687;SOR=1.420 GT:AD:DP:GQ:PL 0/1:33,35,8:76:99:836,0,820,685,673,1584
chrM 1581 . A C,G 492.77 . AC=1,1;AF=0.5,0.5;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=48.09;QD=32.85;SOR=5.549 GT:AD:DP:GQ:PL 1/2:0,11,4:15:85:521,117,85,404,0,392
chrM 2261 . C T,CATTTT 4096.90 . AC=2,0;AF=1.00,0.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.45;SOR=4.768 GT:AD:DP:GQ:PL 1/1:0,37,0:37:99:1248,110,0,1248,110,1248
chrM 2354 . C T 3755.77 . AC=2;AF=1.00;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.95;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3784,341,0
van den Berg authored