Add testing to vcf-to-varda

test/test-integration.yml

@@ -46,7 +46,7 @@
     --singularity-args ' --containall --bind /tmp'
     --notemp
     --cores 1
-    16699289_trimmed.vcf
+    16699289_variants_ucsc.varda
   files:
     - path: 16699289_trimmed.vcf
       must_not_contain:
@@ -57,3 +57,11 @@
           - "chrM\t195\t.\tC\t*"
           - "chrM\t410\t.\tA\tC"
           - "chrM\t2261\t.\tC\tT"
+    - path: 16699289_single.vcf
+    - path: 16699289_no_alt_star.vcf
+      must_not_contain:
+          - "chrM\t195\t.\tC\t*"
+      contains:
+          - "chrM\t152\t.\tT\tC"
+          - "chrM\t410\t.\tA\tC"
+    - path: 16699289_variants_ucsc.varda