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Created with Raphaël 2.2.014Jul26Mar231714111098427Jan410Dec829Sep28228Aug27262524212012729Jul28242226Jun25242322173229May130Apr2923222120181716158763131Mar3014Jan13109820Dec1912Nov25Oct2217Sep29Aug2829Jul1721Jun12331May292827232215141086130Apr2928Mar2726211219Feb21Jan1017Sep141231Jul28Jun271311May16Apr11530Mar282722128762128Feb27261519Jan30Nov292827242387Set java temp dir for picard markduplicatescapture-gscapture-gsMerge branch 'testing' of github.com:LUMC/hutspot into testingtestingtestingReduce the number of test scattersCheck size of created files on failureOnly test small-scatter on githubGroup up tests to reduce load on test runnersMerge branch 'develop' of github.com:LUMC/hutspot into developRewrite multi sample calling to use scattersUpdate slurm cluster configurationAutomatically remove intermediate bam and fastq filesUpdate example config file and add to testsMerge branch 'develop' of github.com:LUMC/hutspot into developUse tmp on shared filesystem for aling ruleAdd CI badgedevelop masterdevelop masterMerge pull request #10 from LUMC/developMerge pull request #9 from LUMC/mainMerge pull request #8 from LUMC/testingFix indentationMerge branch 'testing' of github.com:LUMC/hutspot into testingFix tests and add cachingFix typo in test nameUpdate changelogRemove requirements fileRevert "Remove test integration-small-scatter"Make scatter test less brittleSwitch to chunked-scatter instead of biopetRemove test integration-small-scatterAdd more required packages to the environmentAdd github workflowsAdd changelogAdd conda environment fileMerge branch 'develop' into mainInstall requirements before running testsInstall requirements before running testsInstall requirements before running testsMerge branch 'capture-gs' of git.lumc.nl:klinische-genetica/capture-lumc/hutspotMerge branch 'develop' of git.lumc.nl:klinische-genetica/capture-lumc/hutspot into developAdd option to generate a true multisample VCF fileAdd cluster settings for merge_vcfAdd option to create a merged multi sample VCF