Merge requests · Klinische Genetica / capture-lumc / hutspot

Handle cases where no regions of interest are defined (e.g. WGS)

!5 · created Mar 07, 2018 by Sander Bollen Colibri on API Infra
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updated Mar 08, 2018
Copy bai to bam.bai

!4 · created Mar 07, 2018 by Sander Bollen Colibri on API Infra
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updated Mar 07, 2018
Update pytest workflow code

!18 · created Mar 04, 2021 by van den Berg Improvement
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updated Mar 04, 2021
Revert "Remove explicit tmp folder"

!17 · created Jul 24, 2020 by van den Berg devel Bug
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updated Jul 24, 2020
Add optional bed coverage output files

!16 · created Jun 26, 2020 by van den Berg devel Improvement
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updated Jun 26, 2020
No longer merge fastq files from different read groups together

!15 · created Apr 21, 2020 by van den Berg devel Improvement Speed up
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updated Apr 23, 2020
Deprecate conda, make pipeline more general

!13 · created Jan 08, 2020 by van den Berg Improvement
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updated Jan 10, 2020
Fix typo in resource requirement.

!12 · created Dec 20, 2019 by Ruben Vorderman
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updated Dec 20, 2019
Fix picard heapspace error in align rule

!11 · created Jul 18, 2019 by van den Berg
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updated Jul 29, 2019
Licensing

!10 · created Mar 12, 2019 by Sander Bollen
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updated Mar 12, 2019
Pytest workflow testing

!9 · created Feb 19, 2019 by Sander Bollen
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updated Feb 19, 2019
fix vcfstats conda env

!8 · created Jan 21, 2019 by Sander Bollen
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updated Jan 21, 2019
explicitly put output of bc -l in variable.

!7 · created Sep 12, 2018 by Sander Bollen
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updated Sep 17, 2018
Fastq data in stats

!6 · created Mar 27, 2018 by Sander Bollen
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- 1
updated Mar 27, 2018
Vtoolscoverage

!3 · created Mar 02, 2018 by Sander Bollen
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updated Mar 06, 2018
Review comments

!2 · created Feb 26, 2018 by Sander Bollen
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- 5
updated Mar 02, 2018