Fix picard heapspace error in align rule
In the Singularity image for picard, the default heapsize is too small, leading to crashes in the pipeline when the rule 'align' runs out of heap space. The solution is to explicitly specify the heap space that picard can use, thereby overriding the default value that is set in the Singularity image. This issue was reported on capture-lumc-wrapper, see https://git.lumc.nl/klinische-genetica/capture-lumc/capture-lumc-wrapper/issues/26 for details.
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#4166
docker
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test_sanities |
00:00:43
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#4161
docker
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test_sanities |
00:01:41
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| failed |
#4137
docker
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test_sanities |
00:00:42
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#4138
docker
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test_dry_run |
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#4140
slurm
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test_integration |
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#4139
docker
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test_integration_singularity |
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failed
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test_sanities | Sanity | ||
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